rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType > Class Template Reference

#include <rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h>

Inheritance diagram for rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >:

Collaboration diagram for rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >:

Public Types
using	CPUDVFInterpolatorType = CyclicDeformationImageFilter< DVFSequenceImageType, DVFImageType >
using	CPUVolumeSeriesType = typename itk::Image< typename VolumeSeriesType::PixelType, VolumeSeriesType::ImageDimension >
using	CudaCyclicDeformationImageFilterType = CPUDVFInterpolatorType
using	DVFImageType = itk::Image< VectorForDVF, VolumeSeriesType::ImageDimension - 1 >
using	DVFSequenceImageType = itk::Image< VectorForDVF, VolumeSeriesType::ImageDimension >
using	Pointer = itk::SmartPointer< Self >
using	Self = MotionCompensatedFourDReconstructionConjugateGradientOperator
using	Superclass = FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >
using	VectorForDVF = itk::CovariantVector< typename VolumeSeriesType::ValueType, VolumeSeriesType::ImageDimension - 1 >
using	VolumeType = ProjectionStackType
using	WarpBackProjectionImageFilterType = BackProjectionImageFilter< VolumeType, VolumeType >
using	WarpForwardProjectionImageFilterType = JosephForwardProjectionImageFilter< ProjectionStackType, ProjectionStackType >
Public Types inherited from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >
using	BackProjectionFilterType = BackProjectionImageFilter< ProjectionStackType, ProjectionStackType >
using	ConstantProjectionStackSourceType = ConstantImageSource< ProjectionStackType >
using	ConstantVolumeSeriesSourceType = ConstantImageSource< VolumeSeriesType >
using	ConstantVolumeSourceType = ConstantImageSource< VolumeType >
using	CPUProjectionStackType = typename itk::Image< typename ProjectionStackType::PixelType, ProjectionStackType::ImageDimension >
using	CudaConstantVolumeSeriesSourceType = ConstantVolumeSeriesSourceType
using	CudaConstantVolumeSourceType = ConstantVolumeSourceType
using	CudaInterpolateImageFilterType = InterpolationFilterType
using	CudaSplatImageFilterType = SplatFilterType
using	DisplacedDetectorFilterType = DisplacedDetectorImageFilter< ProjectionStackType >
using	ForwardProjectionFilterType = ForwardProjectionImageFilter< ProjectionStackType, ProjectionStackType >
using	InterpolationFilterType = InterpolatorWithKnownWeightsImageFilter< VolumeType, VolumeSeriesType >
using	Pointer = itk::SmartPointer< Self >
using	Self = FourDReconstructionConjugateGradientOperator
using	SplatFilterType = SplatWithKnownWeightsImageFilter< VolumeSeriesType, VolumeType >
using	Superclass = ConjugateGradientOperator< VolumeSeriesType >
using	VolumeType = ProjectionStackType
Public Types inherited from rtk::ConjugateGradientOperator< VolumeSeriesType >
using	Pointer = itk::SmartPointer< Self >
using	Self = ConjugateGradientOperator
using	Superclass = itk::ImageToImageFilter< VolumeSeriesType, VolumeSeriesType >

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
void	SetSignal (const std::vector< double > signal) override
virtual const char *	GetNameOfClass () const
void	SetForwardProjectionFilter (const typename Superclass::ForwardProjectionFilterType::Pointer)
void	SetBackProjectionFilter (const typename Superclass::BackProjectionFilterType::Pointer)
void	SetDisplacementField (const DVFSequenceImageType *DisplacementField)
void	SetInverseDisplacementField (const DVFSequenceImageType *InverseDisplacementField)
DVFSequenceImageType::ConstPointer	GetInverseDisplacementField ()
DVFSequenceImageType::ConstPointer	GetDisplacementField ()
virtual void	SetUseCudaCyclicDeformation (bool _arg)
virtual bool	GetUseCudaCyclicDeformation ()
Public Member Functions inherited from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >
void	SetBackProjectionFilter (const typename BackProjectionFilterType::Pointer _arg)
void	SetForwardProjectionFilter (const typename ForwardProjectionFilterType::Pointer _arg)
virtual void	SetGeometry (const ThreeDCircularProjectionGeometry *_arg)
void	SetInputVolumeSeries (const VolumeSeriesType *VolumeSeries)
VolumeSeriesType::ConstPointer	GetInputVolumeSeries ()
void	SetInputProjectionStack (const ProjectionStackType *Projections)
ProjectionStackType::ConstPointer	GetInputProjectionStack ()
virtual void	SetUseCudaInterpolation (bool _arg)
virtual bool	GetUseCudaInterpolation ()
virtual void	SetUseCudaSplat (bool _arg)
virtual bool	GetUseCudaSplat ()
virtual void	SetUseCudaSources (bool _arg)
virtual bool	GetUseCudaSources ()
virtual itk::Array2D< float >	GetWeights ()
virtual void	SetWeights (itk::Array2D< float > _arg)
virtual void	SetDisableDisplacedDetectorFilter (bool _arg)
virtual bool	GetDisableDisplacedDetectorFilter ()
Public Member Functions inherited from rtk::ConjugateGradientOperator< VolumeSeriesType >
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual void	SetX (const VolumeSeriesType *OutputImage)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >
static Pointer	New ()
Static Public Member Functions inherited from rtk::ConjugateGradientOperator< VolumeSeriesType >
static Pointer	New ()

Protected Member Functions
void	GenerateData () override
void	GenerateOutputInformation () override
	MotionCompensatedFourDReconstructionConjugateGradientOperator ()
void	VerifyInputInformation () const override
	~MotionCompensatedFourDReconstructionConjugateGradientOperator () override=default
Protected Member Functions inherited from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >
	FourDReconstructionConjugateGradientOperator ()
void	GenerateInputRequestedRegion () override
void	InitializeConstantSources ()
void	VerifyPreconditions () const override
	~FourDReconstructionConjugateGradientOperator () override=default
Protected Member Functions inherited from rtk::ConjugateGradientOperator< VolumeSeriesType >
	ConjugateGradientOperator ()
	~ConjugateGradientOperator () override=default

Protected Attributes
CPUDVFInterpolatorType::Pointer	m_DVFInterpolatorFilter
CPUDVFInterpolatorType::Pointer	m_InverseDVFInterpolatorFilter
std::vector< double >	m_Signal
bool	m_UseCudaCyclicDeformation
Protected Attributes inherited from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >
BackProjectionFilterType::Pointer	m_BackProjectionFilter
ConstantProjectionStackSourceType::Pointer	m_ConstantProjectionStackSource
ConstantVolumeSeriesSourceType::Pointer	m_ConstantVolumeSeriesSource
ConstantVolumeSourceType::Pointer	m_ConstantVolumeSource1
ConstantVolumeSourceType::Pointer	m_ConstantVolumeSource2
bool	m_DisableDisplacedDetectorFilter
DisplacedDetectorFilterType::Pointer	m_DisplacedDetectorFilter
ForwardProjectionFilterType::Pointer	m_ForwardProjectionFilter
ThreeDCircularProjectionGeometry::ConstPointer	m_Geometry
InterpolationFilterType::Pointer	m_InterpolationFilter
std::vector< double >	m_Signal
SplatFilterType::Pointer	m_SplatFilter
bool	m_UseCudaInterpolation
bool	m_UseCudaSources
bool	m_UseCudaSplat
itk::Array2D< float >	m_Weights

Detailed Description

template<typename VolumeSeriesType, typename ProjectionStackType>
class rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >

Like FourDReconstructionConjugateGradientOperator, but motion-compensated.

Test:

rtkfourdconjugategradienttest.cxx

Author

Cyril Mory

Definition at line 100 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

Member Typedef Documentation

CPUDVFInterpolatorType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::CPUDVFInterpolatorType = CyclicDeformationImageFilter<DVFSequenceImageType, DVFImageType>

Definition at line 140 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

CPUVolumeSeriesType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::CPUVolumeSeriesType = typename itk::Image<typename VolumeSeriesType::PixelType, VolumeSeriesType::ImageDimension>

SFINAE type alias, depending on whether a CUDA image is used.

Definition at line 117 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

CudaCyclicDeformationImageFilterType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::CudaCyclicDeformationImageFilterType = CPUDVFInterpolatorType

Definition at line 146 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

DVFImageType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::DVFImageType = itk::Image<VectorForDVF, VolumeSeriesType::ImageDimension - 1>

Definition at line 135 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

DVFSequenceImageType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::DVFSequenceImageType = itk::Image<VectorForDVF, VolumeSeriesType::ImageDimension>

Definition at line 134 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

Pointer

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::Pointer = itk::SmartPointer<Self>

Definition at line 109 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

Self

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::Self = MotionCompensatedFourDReconstructionConjugateGradientOperator

Standard class type alias.

Definition at line 107 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

Superclass

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::Superclass = FourDReconstructionConjugateGradientOperator<VolumeSeriesType, ProjectionStackType>

Definition at line 108 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

VectorForDVF

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::VectorForDVF = itk::CovariantVector<typename VolumeSeriesType::ValueType, VolumeSeriesType::ImageDimension - 1>

Definition at line 113 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

VolumeType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::VolumeType = ProjectionStackType

Convenient type alias

Definition at line 112 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

WarpBackProjectionImageFilterType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::WarpBackProjectionImageFilterType = BackProjectionImageFilter<VolumeType, VolumeType>

Definition at line 138 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

WarpForwardProjectionImageFilterType

template<typename VolumeSeriesType , typename ProjectionStackType >

using rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::WarpForwardProjectionImageFilterType = JosephForwardProjectionImageFilter<ProjectionStackType, ProjectionStackType>

Definition at line 137 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

Constructor & Destructor Documentation

MotionCompensatedFourDReconstructionConjugateGradientOperator()

template<typename VolumeSeriesType , typename ProjectionStackType >

rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::MotionCompensatedFourDReconstructionConjugateGradientOperator ( )

protected

~MotionCompensatedFourDReconstructionConjugateGradientOperator()

template<typename VolumeSeriesType , typename ProjectionStackType >

rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::~MotionCompensatedFourDReconstructionConjugateGradientOperator ( )

overrideprotecteddefault

Member Function Documentation

CreateAnother()

template<typename VolumeSeriesType , typename ProjectionStackType >

virtual::itk::LightObject::Pointer rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::CreateAnother ( ) const

virtual

Reimplemented from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >.

GenerateData()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::GenerateData ( )

overrideprotectedvirtual

Does the real work.

Reimplemented from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >.

GenerateOutputInformation()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::GenerateOutputInformation ( )

overrideprotectedvirtual

Builds the pipeline and computes output information

Reimplemented from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >.

GetDisplacementField()

template<typename VolumeSeriesType , typename ProjectionStackType >

DVFSequenceImageType::ConstPointer rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::GetDisplacementField

(

)

The ND + time motion vector field

GetInverseDisplacementField()

template<typename VolumeSeriesType , typename ProjectionStackType >

DVFSequenceImageType::ConstPointer rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::GetInverseDisplacementField

(

)

The ND + time motion vector field

GetNameOfClass()

template<typename VolumeSeriesType , typename ProjectionStackType >

virtual const char* rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >.

GetUseCudaCyclicDeformation()

template<typename VolumeSeriesType , typename ProjectionStackType >

virtual bool rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::GetUseCudaCyclicDeformation ( )

virtual

Set and Get for the UseCudaCyclicDeformation variable

New()

template<typename VolumeSeriesType , typename ProjectionStackType >

static Pointer rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::New ( )

static

Method for creation through the object factory.

SetBackProjectionFilter()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::SetBackProjectionFilter ( const typename Superclass::BackProjectionFilterType::Pointer  )

inline

The forward and back projection filters cannot be set by the user

Definition at line 168 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

SetDisplacementField()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::SetDisplacementField

(

const DVFSequenceImageType *

DisplacementField

)

The ND + time motion vector field

SetForwardProjectionFilter()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::SetForwardProjectionFilter ( const typename Superclass::ForwardProjectionFilterType::Pointer  )

inline

The forward and back projection filters cannot be set by the user

Definition at line 163 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

SetInverseDisplacementField()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::SetInverseDisplacementField

(

const DVFSequenceImageType *

InverseDisplacementField

)

The ND + time motion vector field

SetSignal()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::SetSignal ( const std::vector< double >  signal )

overridevirtual

Set the vector containing the signal in the sub-filters

Reimplemented from rtk::FourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >.

SetUseCudaCyclicDeformation()

template<typename VolumeSeriesType , typename ProjectionStackType >

virtual void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::SetUseCudaCyclicDeformation ( bool  _arg )

virtual

Set and Get for the UseCudaCyclicDeformation variable

VerifyInputInformation()

template<typename VolumeSeriesType , typename ProjectionStackType >

void rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::VerifyInputInformation ( ) const

inlineoverrideprotectedvirtual

The inputs should not be in the same space so there is nothing to verify

Reimplemented from itk::ProcessObject.

Definition at line 204 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

Member Data Documentation

m_DVFInterpolatorFilter

template<typename VolumeSeriesType , typename ProjectionStackType >

CPUDVFInterpolatorType::Pointer rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::m_DVFInterpolatorFilter

protected

Member pointers to the filters used internally (for convenience)

Definition at line 212 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

m_InverseDVFInterpolatorFilter

template<typename VolumeSeriesType , typename ProjectionStackType >

CPUDVFInterpolatorType::Pointer rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::m_InverseDVFInterpolatorFilter

protected

Definition at line 213 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

m_Signal

template<typename VolumeSeriesType , typename ProjectionStackType >

std::vector<double> rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::m_Signal

protected

Definition at line 214 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

m_UseCudaCyclicDeformation

template<typename VolumeSeriesType , typename ProjectionStackType >

bool rtk::MotionCompensatedFourDReconstructionConjugateGradientOperator< VolumeSeriesType, ProjectionStackType >::m_UseCudaCyclicDeformation

protected

Definition at line 215 of file rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h.

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The documentation for this class was generated from the following file:

• rtkMotionCompensatedFourDReconstructionConjugateGradientOperator.h